J4_4V6K_009

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

4V6K|1|AB|A|2288

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6K_009 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.1837

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

4V6K|1|AB|C|2285
4V6K|1|AB|G|2286
4V6K|1|AB|A|2287
4V6K|1|AB|A|2288
4V6K|1|AB|G|2289
*
4V6K|1|AB|U|2343
4V6K|1|AB|U|2344
4V6K|1|AB|G|2345
4V6K|1|AB|A|2346
4V6K|1|AB|C|2347
*
4V6K|1|AB|G|2370
4V6K|1|AB|G|2371
4V6K|1|AB|U|2372
*
4V6K|1|AB|A|2381
4V6K|1|AB|G|2382
4V6K|1|AB|G|2383

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AX

50S ribosomal protein L27

Chain Ad

50S ribosomal protein L33

Chain Af

50S ribosomal protein L35