J4_4V6M_010

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

4V6M|1|B8|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6M_010 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.156

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6M|1|B8|U|1313
4V6M|1|B8|C|1314
*
4V6M|1|B8|G|1338
4V6M|1|B8|G|1339
4V6M|1|B8|U|1340
4V6M|1|B8|G|1341
4V6M|1|B8|A|1342
4V6M|1|B8|G|1343
*
4V6M|1|B8|C|1404
4V6M|1|B8|U|1405
*
4V6M|1|B8|A|1597
4V6M|1|B8|A|1598
4V6M|1|B8|U|1599
4V6M|1|B8|C|1600
4V6M|1|B8|G|1601
4V6M|1|B8|U|1602
4V6M|1|B8|A|1603

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BA

Preprotein translocase secY subunit

Chain BT

50S ribosomal protein L23