3D structure

PDB id
4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
4V6Q|1|AA|C|576, 4V6Q|1|AA|G|818, 4V6Q|1|AA|A|819, 4V6Q|1|AA|U|820
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V6Q_003 not in the Motif Atlas
Homologous match to J4_6CZR_013
Geometric discrepancy: 0.4126
The information below is about J4_6CZR_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.5
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4V6Q|1|AA|G|575
4V6Q|1|AA|C|576
4V6Q|1|AA|G|577
*
4V6Q|1|AA|C|764
4V6Q|1|AA|G|765
4V6Q|1|AA|A|766
4V6Q|1|AA|A|767
4V6Q|1|AA|A|768
4V6Q|1|AA|G|769
*
4V6Q|1|AA|C|810
4V6Q|1|AA|C|811
4V6Q|1|AA|G|812
4V6Q|1|AA|U|813
4V6Q|1|AA|A|814
4V6Q|1|AA|A|815
4V6Q|1|AA|A|816
4V6Q|1|AA|C|817
4V6Q|1|AA|G|818
4V6Q|1|AA|A|819
4V6Q|1|AA|U|820
4V6Q|1|AA|G|821
*
4V6Q|1|AA|C|879
4V6Q|1|AA|C|880

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AK
30S ribosomal protein S8
Chain AN
30S ribosomal protein S11
Chain AO
30S ribosomal protein S12
Chain AR
30S ribosomal protein S15
Chain AT
30S ribosomal protein S17
Chain AX
30S ribosomal protein S21
Chain BB
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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