3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V6R_018 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.1619
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4V6R|1|BB|A|1772
4V6R|1|BB|A|1773
4V6R|1|BB|C|1774
4V6R|1|BB|U|1775
4V6R|1|BB|G|1776
*
4V6R|1|BB|C|1788
4V6R|1|BB|A|1789
4V6R|1|BB|C|1790
4V6R|1|BB|A|1791
4V6R|1|BB|G|1792
*
4V6R|1|BB|U|1827
4V6R|1|BB|G|1828
4V6R|1|BB|A|1829
4V6R|1|BB|C|1830
*
4V6R|1|BB|G|1975
4V6R|1|BB|U|1976
4V6R|1|BB|A|1977
4V6R|1|BB|A|1978
4V6R|1|BB|U|1979

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain BD
50S ribosomal protein L2

Coloring options:


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