J4_4V76_005

3D structure

PDB id

4V76 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

4V76|1|AA|C|576, 4V76|1|AA|A|815, 4V76|1|AA|G|818, 4V76|1|AA|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V76_005 not in the Motif Atlas

Homologous match to J4_6CZR_013

Geometric discrepancy: 0.3108

The information below is about J4_6CZR_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.5

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V76|1|AA|G|575
4V76|1|AA|C|576
4V76|1|AA|G|577
*
4V76|1|AA|C|764
4V76|1|AA|G|765
4V76|1|AA|A|766
4V76|1|AA|A|767
4V76|1|AA|A|768
4V76|1|AA|G|769
*
4V76|1|AA|C|810
4V76|1|AA|C|811
4V76|1|AA|G|812
4V76|1|AA|U|813
4V76|1|AA|A|814
4V76|1|AA|A|815
4V76|1|AA|A|816
4V76|1|AA|C|817
4V76|1|AA|G|818
4V76|1|AA|A|819
4V76|1|AA|U|820
4V76|1|AA|G|821
*
4V76|1|AA|C|879
4V76|1|AA|C|880

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AK

30S ribosomal protein S11

Chain AL

30S ribosomal protein S12

Chain AO

30S ribosomal protein S15

Chain AQ

30S ribosomal protein S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA