3D structure

PDB id
4V79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
4V79|1|BA|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V79_006 not in the Motif Atlas
Homologous match to J4_7A0S_001
Geometric discrepancy: 0.2568
The information below is about J4_7A0S_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

4V79|1|BA|C|268
4V79|1|BA|C|269
*
4V79|1|BA|G|370
4V79|1|BA|A|371
4V79|1|BA|G|372
4V79|1|BA|U|373
4V79|1|BA|A|374
4V79|1|BA|G|375
*
4V79|1|BA|U|399
4V79|1|BA|G|400
4V79|1|BA|A|401
4V79|1|BA|A|402
4V79|1|BA|U|403
4V79|1|BA|A|404
4V79|1|BA|U|405
4V79|1|BA|G|406
*
4V79|1|BA|C|421
4V79|1|BA|A|422
4V79|1|BA|A|423
4V79|1|BA|G|424

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BX
50S ribosomal protein L28

Coloring options:


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