3D structure

PDB id
4V79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V79_016 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.3228
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4V79|1|BA|A|1772
4V79|1|BA|A|1773
4V79|1|BA|C|1774
4V79|1|BA|U|1775
4V79|1|BA|G|1776
*
4V79|1|BA|C|1788
4V79|1|BA|A|1789
4V79|1|BA|C|1790
4V79|1|BA|A|1791
4V79|1|BA|G|1792
*
4V79|1|BA|U|1827
4V79|1|BA|G|1828
4V79|1|BA|A|1829
4V79|1|BA|C|1830
*
4V79|1|BA|G|1975
4V79|1|BA|U|1976
4V79|1|BA|A|1977
4V79|1|BA|A|1978
4V79|1|BA|U|1979

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain BC
50S ribosomal protein L2

Coloring options:


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