3D structure

PDB id
4V7B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Visualization of two tRNAs trapped in transit during EF-G-mediated translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V7B_013 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.0535
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4V7B|1|BA|A|1772
4V7B|1|BA|A|1773
4V7B|1|BA|C|1774
4V7B|1|BA|U|1775
4V7B|1|BA|G|1776
*
4V7B|1|BA|C|1788
4V7B|1|BA|A|1789
4V7B|1|BA|C|1790
4V7B|1|BA|A|1791
4V7B|1|BA|G|1792
*
4V7B|1|BA|U|1827
4V7B|1|BA|G|1828
4V7B|1|BA|A|1829
4V7B|1|BA|C|1830
*
4V7B|1|BA|G|1975
4V7B|1|BA|U|1976
4V7B|1|BA|A|1977
4V7B|1|BA|A|1978
4V7B|1|BA|U|1979

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BC
50S ribosomal protein L2

Coloring options:


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