J4_4V7I_004

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

4V7I|1|A8|G|1271, 4V7I|1|A8|A|1272, 4V7I|1|A8|U|1273, 4V7I|1|A8|A|1274, 4V7I|1|A8|C|1646, 4V7I|1|A8|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7I_004 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.3571

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4V7I|1|A8|C|1270
4V7I|1|A8|G|1271
4V7I|1|A8|A|1272
4V7I|1|A8|U|1273
4V7I|1|A8|A|1274
4V7I|1|A8|A|1275
4V7I|1|A8|A|1276
*
4V7I|1|A8|U|1294
4V7I|1|A8|C|1295
*
4V7I|1|A8|G|1645
4V7I|1|A8|C|1646
4V7I|1|A8|U|1647
4V7I|1|A8|U|1648
*
4V7I|1|A8|A|2009
4V7I|1|A8|G|2010

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L32

Chain AN

50S ribosomal protein L17

Chain AS

50S ribosomal protein L22