J4_4V7J_013

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V7J|1|Aa|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7J_013 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1007

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V7J|1|Aa|G|142
4V7J|1|Aa|A|143
4V7J|1|Aa|G|144
*
4V7J|1|Aa|C|178
4V7J|1|Aa|A|179
4V7J|1|Aa|U|180
4V7J|1|Aa|G|181
4V7J|1|Aa|U|182
4V7J|1|Aa|G|183
*
4V7J|1|Aa|C|194
4V7J|1|Aa|A|195
4V7J|1|Aa|A|196
4V7J|1|Aa|A|197
4V7J|1|Aa|G|198
*
4V7J|1|Aa|C|219
4V7J|1|Aa|G|220
4V7J|1|Aa|C|221

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain Ap

30S ribosomal protein S16

Chain At

30S ribosomal protein S20