J4_4V7J_032

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

4V7J|1|AA|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7J_032 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.164

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

4V7J|1|AA|C|2285
4V7J|1|AA|A|2286
4V7J|1|AA|A|2287
4V7J|1|AA|A|2288
4V7J|1|AA|G|2289
*
4V7J|1|AA|C|2343
4V7J|1|AA|U|2344
4V7J|1|AA|G|2345
4V7J|1|AA|A|2346
4V7J|1|AA|C|2347
*
4V7J|1|AA|G|2370
4V7J|1|AA|G|2371
4V7J|1|AA|G|2372
*
4V7J|1|AA|C|2381
4V7J|1|AA|G|2382
4V7J|1|AA|G|2383

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain A0

50S ribosomal protein L27

Chain A6

50S ribosomal protein L33

Chain A8

50S ribosomal protein L35