J4_4V7M_002

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V7M|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7M_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0903

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V7M|1|AA|G|142
4V7M|1|AA|A|143
4V7M|1|AA|G|144
*
4V7M|1|AA|C|178
4V7M|1|AA|A|179
4V7M|1|AA|U|180
4V7M|1|AA|G|181
4V7M|1|AA|U|182
4V7M|1|AA|G|183
*
4V7M|1|AA|C|194
4V7M|1|AA|A|195
4V7M|1|AA|A|196
4V7M|1|AA|A|197
4V7M|1|AA|G|198
*
4V7M|1|AA|C|219
4V7M|1|AA|G|220
4V7M|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20