J4_4V7R_023

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GUG

Length

16 nucleotides

Bulged bases

4V7R|1|D1|A|2657, 4V7R|1|D1|U|2752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7R_023 not in the Motif Atlas

Homologous match to J4_8P9A_019

Geometric discrepancy: 0.2386

The information below is about J4_8P9A_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59590.1

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F

Number of instances in this motif group

3

Unit IDs

4V7R|1|D1|C|2654
4V7R|1|D1|U|2655
4V7R|1|D1|A|2656
4V7R|1|D1|A|2657
4V7R|1|D1|G|2658
*
4V7R|1|D1|U|2712
4V7R|1|D1|U|2713
4V7R|1|D1|G|2714
4V7R|1|D1|A|2715
4V7R|1|D1|U|2716
*
4V7R|1|D1|A|2740
4V7R|1|D1|C|2741
4V7R|1|D1|C|2742
*
4V7R|1|D1|G|2751
4V7R|1|D1|U|2752
4V7R|1|D1|G|2753

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DT

60S ribosomal protein L21-A

Chain Df

60S ribosomal protein L42