J4_4V8E_012

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V8E|1|BA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8E_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1535

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V8E|1|BA|G|142
4V8E|1|BA|A|143
4V8E|1|BA|G|144
*
4V8E|1|BA|C|178
4V8E|1|BA|A|179
4V8E|1|BA|U|180
4V8E|1|BA|G|181
4V8E|1|BA|U|182
4V8E|1|BA|G|183
*
4V8E|1|BA|C|194
4V8E|1|BA|A|195
4V8E|1|BA|A|196
4V8E|1|BA|A|197
4V8E|1|BA|G|198
*
4V8E|1|BA|C|219
4V8E|1|BA|G|220
4V8E|1|BA|C|221

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BW

30S RIBOSOMAL PROTEIN S20