J4_4V8E_021

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8E_021 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0564

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V8E|1|CA|G|1804
4V8E|1|CA|A|1805
4V8E|1|CA|C|1806
4V8E|1|CA|U|1807
4V8E|1|CA|G|1808
*
4V8E|1|CA|C|1820
4V8E|1|CA|A|1821
4V8E|1|CA|C|1822
4V8E|1|CA|A|1823
4V8E|1|CA|G|1824
*
4V8E|1|CA|C|1859
4V8E|1|CA|G|1860
4V8E|1|CA|A|1861
4V8E|1|CA|C|1862
*
4V8E|1|CA|G|1998
4V8E|1|CA|U|1999
4V8E|1|CA|A|2000
4V8E|1|CA|A|2001
4V8E|1|CA|C|2002

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA