J4_4V8J_002

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V8J|1|AA|A|203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8J_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0973

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V8J|1|AA|G|136
4V8J|1|AA|A|137
4V8J|1|AA|G|138
*
4V8J|1|AA|C|172
4V8J|1|AA|A|173
4V8J|1|AA|U|174
4V8J|1|AA|G|175
4V8J|1|AA|U|176
4V8J|1|AA|G|177
*
4V8J|1|AA|C|200
4V8J|1|AA|A|201
4V8J|1|AA|A|202
4V8J|1|AA|A|203
4V8J|1|AA|G|204
*
4V8J|1|AA|C|214
4V8J|1|AA|G|215
4V8J|1|AA|C|216

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20