J4_4V8P_009
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 4V8P|1|A1|A|2646
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8P_009 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.1038
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8P|1|A1|C|2643
4V8P|1|A1|U|2644
4V8P|1|A1|A|2645
4V8P|1|A1|A|2646
4V8P|1|A1|G|2647
*
4V8P|1|A1|U|2701
4V8P|1|A1|U|2702
4V8P|1|A1|G|2703
4V8P|1|A1|A|2704
4V8P|1|A1|U|2705
*
4V8P|1|A1|A|2729
4V8P|1|A1|C|2730
4V8P|1|A1|C|2731
*
4V8P|1|A1|G|2740
4V8P|1|A1|U|2741
4V8P|1|A1|G|2742
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AC
- 60S RIBOSOMAL PROTEIN L36A
- Chain AT
- RPL29
- Chain BM
- 60S RIBOSOMAL PROTEIN L5
- Chain BP
- 60S RIBOSOMAL PROTEIN L21
Coloring options: