J4_4V8T_010
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 4V8T|1|5|A|2657
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8T_010 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.0955
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
4V8T|1|5|C|2654
4V8T|1|5|U|2655
4V8T|1|5|A|2656
4V8T|1|5|A|2657
4V8T|1|5|G|2658
*
4V8T|1|5|U|2712
4V8T|1|5|U|2713
4V8T|1|5|G|2714
4V8T|1|5|A|2715
4V8T|1|5|U|2716
*
4V8T|1|5|A|2740
4V8T|1|5|C|2741
4V8T|1|5|C|2742
*
4V8T|1|5|G|2751
4V8T|1|5|U|2752
4V8T|1|5|G|2753
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain D
- 60S RIBOSOMAL PROTEIN L5
- Chain T
- 60S RIBOSOMAL PROTEIN L21-A
- Chain b
- 60S RIBOSOMAL PROTEIN L29
- Chain o
- 60S RIBOSOMAL PROTEIN L42-A
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