J4_4V8Z_001
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 4V8Z|1|B2|A|359
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8Z_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.0608
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8Z|1|B2|C|99
4V8Z|1|B2|A|100
4V8Z|1|B2|U|101
4V8Z|1|B2|U|102
4V8Z|1|B2|A|103
4V8Z|1|B2|A|104
4V8Z|1|B2|A|105
4V8Z|1|B2|U|106
4V8Z|1|B2|C|107
*
4V8Z|1|B2|G|307
4V8Z|1|B2|C|308
4V8Z|1|B2|C|309
*
4V8Z|1|B2|G|357
4V8Z|1|B2|U|358
4V8Z|1|B2|A|359
4V8Z|1|B2|A|360
4V8Z|1|B2|C|361
*
4V8Z|1|B2|G|383
4V8Z|1|B2|G|384
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AE
- 40S RIBOSOMAL PROTEIN S4-A
- Chain AI
- 40S RIBOSOMAL PROTEIN S8-A
- Chain AL
- 40S RIBOSOMAL PROTEIN S11-A
- Chain AX
- 40S RIBOSOMAL PROTEIN S23-A
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