J4_4V91_009

3D structure

PDB id

4V91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V91_009 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.0981

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V91|1|1|U|3010
4V91|1|1|A|3011
4V91|1|1|A|3012
*
4V91|1|1|U|3042
4V91|1|1|C|3043
*
4V91|1|1|G|3098
4V91|1|1|C|3099
4V91|1|1|U|3100
*
4V91|1|1|A|3134
4V91|1|1|U|3135
4V91|1|1|G|3136

Current chains

Chain 1

25S RRNA

Nearby chains

Chain B

UL3

Chain O

UL13

Chain V

UL14