J4_4V9A_019

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V9A|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9A_019 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1181

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9A|1|DA|C|268
4V9A|1|DA|U|269
*
4V9A|1|DA|G|370
4V9A|1|DA|A|371
4V9A|1|DA|G|372
4V9A|1|DA|U|373
4V9A|1|DA|A|374
4V9A|1|DA|C|375
*
4V9A|1|DA|G|399
4V9A|1|DA|G|400
4V9A|1|DA|A|401
4V9A|1|DA|A|402
4V9A|1|DA|U|403
4V9A|1|DA|C|404
4V9A|1|DA|U|405
4V9A|1|DA|G|406
*
4V9A|1|DA|U|421
4V9A|1|DA|A|422
4V9A|1|DA|A|423
4V9A|1|DA|G|424

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DK

50S ribosomal protein L9

Chain DZ

50S ribosomal protein L28