3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CAAAG*CUGAC*GGG*CGG
Length
16 nucleotides
Bulged bases
4V9I|1|BA|A|2299
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V9I_013 not in the Motif Atlas
Homologous match to J4_9DFE_009
Geometric discrepancy: 0.1624
The information below is about J4_9DFE_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

4V9I|1|BA|C|2296
4V9I|1|BA|A|2297
4V9I|1|BA|A|2298
4V9I|1|BA|A|2299
4V9I|1|BA|G|2300
*
4V9I|1|BA|C|2354
4V9I|1|BA|U|2355
4V9I|1|BA|G|2356
4V9I|1|BA|A|2357
4V9I|1|BA|C|2358
*
4V9I|1|BA|G|2381
4V9I|1|BA|G|2382
4V9I|1|BA|G|2383
*
4V9I|1|BA|C|2392
4V9I|1|BA|G|2393
4V9I|1|BA|G|2394

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B0
50S ribosomal protein L27
Chain B6
50S ribosomal protein L33
Chain B8
50S ribosomal protein L35
Chain BS
50S ribosomal protein L18

Coloring options:


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