J4_4V9I_016

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V9I|1|CA|A|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9I_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0873

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V9I|1|CA|G|137
4V9I|1|CA|A|138
4V9I|1|CA|G|139
*
4V9I|1|CA|C|173
4V9I|1|CA|A|174
4V9I|1|CA|U|175
4V9I|1|CA|G|176
4V9I|1|CA|U|177
4V9I|1|CA|G|178
*
4V9I|1|CA|C|201
4V9I|1|CA|A|202
4V9I|1|CA|A|203
4V9I|1|CA|A|204
4V9I|1|CA|G|205
*
4V9I|1|CA|C|215
4V9I|1|CA|G|216
4V9I|1|CA|C|217

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S Ribosomal protein S20