J4_4V9I_023
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UC*GGUUAG*CU*ACCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 4V9I|1|DA|U|1386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V9I_023 not in the Motif Atlas
- Homologous match to J4_9DFE_005
- Geometric discrepancy: 0.0927
- The information below is about J4_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V9I|1|DA|U|1358
4V9I|1|DA|C|1359
*
4V9I|1|DA|G|1383
4V9I|1|DA|G|1384
4V9I|1|DA|U|1385
4V9I|1|DA|U|1386
4V9I|1|DA|A|1387
4V9I|1|DA|G|1388
*
4V9I|1|DA|C|1449
4V9I|1|DA|U|1450
*
4V9I|1|DA|A|1642
4V9I|1|DA|C|1643
4V9I|1|DA|C|1644
4V9I|1|DA|C|1645
4V9I|1|DA|G|1646
4V9I|1|DA|U|1647
4V9I|1|DA|A|1648
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D7
- 50S ribosomal protein L34
- Chain DX
- 50S ribosomal protein L23
Coloring options: