J4_4V9I_027

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

4V9I|1|DA|A|2299, 4V9I|1|DA|G|2393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9I_027 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.159

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

4V9I|1|DA|C|2296
4V9I|1|DA|A|2297
4V9I|1|DA|A|2298
4V9I|1|DA|A|2299
4V9I|1|DA|G|2300
*
4V9I|1|DA|C|2354
4V9I|1|DA|U|2355
4V9I|1|DA|G|2356
4V9I|1|DA|A|2357
4V9I|1|DA|C|2358
*
4V9I|1|DA|G|2381
4V9I|1|DA|G|2382
4V9I|1|DA|G|2383
*
4V9I|1|DA|C|2392
4V9I|1|DA|G|2393
4V9I|1|DA|G|2394

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain D6

50S ribosomal protein L33

Chain D8

50S ribosomal protein L35