J4_4V9L_029

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

4V9L|1|DA|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9L_029 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.2173

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

4V9L|1|DA|C|2285
4V9L|1|DA|A|2286
4V9L|1|DA|A|2287
4V9L|1|DA|A|2288
4V9L|1|DA|G|2289
*
4V9L|1|DA|C|2343
4V9L|1|DA|U|2344
4V9L|1|DA|G|2345
4V9L|1|DA|A|2346
4V9L|1|DA|C|2347
*
4V9L|1|DA|G|2370
4V9L|1|DA|G|2371
4V9L|1|DA|G|2372
*
4V9L|1|DA|C|2381
4V9L|1|DA|G|2382
4V9L|1|DA|G|2383

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain D6

50S ribosomal protein L33

Chain D8

50S ribosomal protein L35