3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CAAAG*CUGAC*GGG*CGG
Length
16 nucleotides
Bulged bases
4W29|1|DA|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4W29_031 not in the Motif Atlas
Homologous match to J4_4WF9_008
Geometric discrepancy: 0.1946
The information below is about J4_4WF9_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

4W29|1|DA|C|2285
4W29|1|DA|A|2286
4W29|1|DA|A|2287
4W29|1|DA|A|2288
4W29|1|DA|G|2289
*
4W29|1|DA|C|2343
4W29|1|DA|U|2344
4W29|1|DA|G|2345
4W29|1|DA|A|2346
4W29|1|DA|C|2347
*
4W29|1|DA|G|2370
4W29|1|DA|G|2371
4W29|1|DA|G|2372
*
4W29|1|DA|C|2381
4W29|1|DA|G|2382
4W29|1|DA|G|2383

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain D0
50S ribosomal protein L27
Chain D6
50S ribosomal protein L33
Chain D8
50S ribosomal protein L35
Chain DS
50S ribosomal protein L18

Coloring options:


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