J4_4WQY_012

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4WQY|1|BA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQY_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0996

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4WQY|1|BA|G|142
4WQY|1|BA|A|143
4WQY|1|BA|G|144
*
4WQY|1|BA|C|178
4WQY|1|BA|A|179
4WQY|1|BA|U|180
4WQY|1|BA|G|181
4WQY|1|BA|U|182
4WQY|1|BA|G|183
*
4WQY|1|BA|C|194
4WQY|1|BA|A|195
4WQY|1|BA|A|196
4WQY|1|BA|A|197
4WQY|1|BA|G|198
*
4WQY|1|BA|C|219
4WQY|1|BA|G|220
4WQY|1|BA|C|221

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BT

30S ribosomal protein S20