J4_4WT8_002

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4WT8|1|Ab|A|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT8_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1136

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4WT8|1|Ab|G|137
4WT8|1|Ab|A|138
4WT8|1|Ab|G|139
*
4WT8|1|Ab|C|173
4WT8|1|Ab|A|174
4WT8|1|Ab|U|175
4WT8|1|Ab|G|176
4WT8|1|Ab|U|177
4WT8|1|Ab|G|178
*
4WT8|1|Ab|C|201
4WT8|1|Ab|A|202
4WT8|1|Ab|A|203
4WT8|1|Ab|A|204
4WT8|1|Ab|G|205
*
4WT8|1|Ab|C|215
4WT8|1|Ab|G|216
4WT8|1|Ab|C|217

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AU

30S ribosomal protein S20