J4_4WT8_009

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

4WT8|1|C1|G|1316, 4WT8|1|C1|A|1317, 4WT8|1|C1|U|1318, 4WT8|1|C1|A|1319, 4WT8|1|C1|C|1692, 4WT8|1|C1|G|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT8_009 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.112

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4WT8|1|C1|C|1315
4WT8|1|C1|G|1316
4WT8|1|C1|A|1317
4WT8|1|C1|U|1318
4WT8|1|C1|A|1319
4WT8|1|C1|A|1320
4WT8|1|C1|A|1321
*
4WT8|1|C1|U|1339
4WT8|1|C1|C|1340
*
4WT8|1|C1|G|1691
4WT8|1|C1|C|1692
4WT8|1|C1|G|1693
4WT8|1|C1|C|1694
*
4WT8|1|C1|G|2030
4WT8|1|C1|G|2031

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C6

50S ribosomal protein L32

Chain CQ

50S ribosomal protein L17

Chain CW

50S ribosomal protein L22