J4_4WT8_013

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT8_013 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0776

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WT8|1|C1|G|1802
4WT8|1|C1|A|1803
4WT8|1|C1|C|1804
4WT8|1|C1|U|1805
4WT8|1|C1|G|1806
*
4WT8|1|C1|C|1818
4WT8|1|C1|A|1819
4WT8|1|C1|C|1820
4WT8|1|C1|A|1821
4WT8|1|C1|G|1822
*
4WT8|1|C1|C|1857
4WT8|1|C1|G|1858
4WT8|1|C1|A|1859
4WT8|1|C1|C|1860
*
4WT8|1|C1|G|1996
4WT8|1|C1|U|1997
4WT8|1|C1|A|1998
4WT8|1|C1|A|1999
4WT8|1|C1|C|2000

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CB

50S ribosomal protein L2