3D structure

PDB id
4WWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to CEM-101
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4WWW_011 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.0432
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4WWW|1|RA|A|1772
4WWW|1|RA|A|1773
4WWW|1|RA|C|1774
4WWW|1|RA|U|1775
4WWW|1|RA|G|1776
*
4WWW|1|RA|C|1788
4WWW|1|RA|A|1789
4WWW|1|RA|C|1790
4WWW|1|RA|A|1791
4WWW|1|RA|G|1792
*
4WWW|1|RA|U|1827
4WWW|1|RA|G|1828
4WWW|1|RA|A|1829
4WWW|1|RA|C|1830
*
4WWW|1|RA|G|1975
4WWW|1|RA|U|1976
4WWW|1|RA|A|1977
4WWW|1|RA|A|1978
4WWW|1|RA|U|1979

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RC
50S ribosomal protein L2

Coloring options:


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