J4_5AJ0_011
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 5AJ0|1|B1|A|1083, 5AJ0|1|B1|C|1085, 5AJ0|1|B1|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AJ0_011 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1164
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5AJ0|1|B1|A|671
5AJ0|1|B1|A|672
5AJ0|1|B1|G|673
*
5AJ0|1|B1|C|1032
5AJ0|1|B1|G|1033
5AJ0|1|B1|A|1034
5AJ0|1|B1|A|1035
5AJ0|1|B1|A|1036
5AJ0|1|B1|G|1037
*
5AJ0|1|B1|C|1078
5AJ0|1|B1|C|1079
5AJ0|1|B1|A|1080
5AJ0|1|B1|U|1081
5AJ0|1|B1|A|1082
5AJ0|1|B1|A|1083
5AJ0|1|B1|A|1084
5AJ0|1|B1|C|1085
5AJ0|1|B1|G|1086
5AJ0|1|B1|A|1087
5AJ0|1|B1|U|1088
5AJ0|1|B1|G|1089
*
5AJ0|1|B1|U|1160
5AJ0|1|B1|U|1161
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41
- Chain Ap
- 60S ribosomal protein L37a
- Chain BL
- 40S ribosomal protein S11
- Chain BN
- 40S ribosomal protein S13
- Chain BO
- 40S ribosomal protein S14
- Chain BW
- 40S ribosomal protein S15a
- Chain BX
- 40S ribosomal protein S23
- Chain Ba
- 40S ribosomal protein S26
Coloring options: