J4_5D8B_016
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 5D8B|1|VC|A|2288, 5D8B|1|VC|G|2382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5D8B_016 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.2169
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5D8B|1|VC|C|2285
5D8B|1|VC|A|2286
5D8B|1|VC|A|2287
5D8B|1|VC|A|2288
5D8B|1|VC|G|2289
*
5D8B|1|VC|C|2343
5D8B|1|VC|U|2344
5D8B|1|VC|G|2345
5D8B|1|VC|A|2346
5D8B|1|VC|C|2347
*
5D8B|1|VC|G|2370
5D8B|1|VC|G|2371
5D8B|1|VC|G|2372
*
5D8B|1|VC|C|2381
5D8B|1|VC|G|2382
5D8B|1|VC|G|2383
Current chains
- Chain VC
- 23S ribosomal RNA
Nearby chains
- Chain BA
- 50S ribosomal protein L35
- Chain M
- 50S ribosomal protein L18
- Chain U
- 50S ribosomal protein L27
- Chain Z
- 50S ribosomal protein L33
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