J4_5DM6_009

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5DM6_009 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.1699

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

5DM6|1|X|C|2285
5DM6|1|X|A|2286
5DM6|1|X|A|2287
5DM6|1|X|A|2288
5DM6|1|X|G|2289
*
5DM6|1|X|U|2343
5DM6|1|X|U|2344
5DM6|1|X|G|2345
5DM6|1|X|A|2346
5DM6|1|X|C|2347
*
5DM6|1|X|G|2370
5DM6|1|X|G|2371
5DM6|1|X|G|2372
*
5DM6|1|X|C|2381
5DM6|1|X|G|2382
5DM6|1|X|G|2383

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain T

50S ribosomal protein L27