J4_5FLX_001
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 5FLX|1|1|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5FLX_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.1715
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5FLX|1|1|C|98
5FLX|1|1|A|99
5FLX|1|1|U|100
5FLX|1|1|U|101
5FLX|1|1|A|102
5FLX|1|1|A|103
5FLX|1|1|A|104
5FLX|1|1|U|105
5FLX|1|1|C|106
*
5FLX|1|1|G|355
5FLX|1|1|C|356
5FLX|1|1|C|357
*
5FLX|1|1|G|405
5FLX|1|1|U|406
5FLX|1|1|G|407
5FLX|1|1|A|408
5FLX|1|1|C|409
*
5FLX|1|1|G|431
5FLX|1|1|G|432
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1
- Chain I
- 40S RIBOSOMAL PROTEIN S8
- Chain L
- 40S RIBOSOMAL PROTEIN S11
- Chain X
- 40S RIBOSOMAL PROTEIN S23
Coloring options: