J4_5HCR_013
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5HCR|1|1a|G|560, 5HCR|1|1a|A|799
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5HCR_013 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0578
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
5HCR|1|1a|G|559
5HCR|1|1a|G|560
5HCR|1|1a|G|561
*
5HCR|1|1a|C|748
5HCR|1|1a|G|749
5HCR|1|1a|A|750
5HCR|1|1a|A|751
5HCR|1|1a|A|752
5HCR|1|1a|G|753
*
5HCR|1|1a|C|794
5HCR|1|1a|C|795
5HCR|1|1a|C|796
5HCR|1|1a|U|797
5HCR|1|1a|A|798
5HCR|1|1a|A|799
5HCR|1|1a|A|800
5HCR|1|1a|C|801
5HCR|1|1a|G|802
5HCR|1|1a|A|803
5HCR|1|1a|U|804
5HCR|1|1a|G|805
*
5HCR|1|1a|C|857
5HCR|1|1a|C|858
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1h
- 30S ribosomal protein S8
- Chain 1l
- 30S ribosomal protein S12
- Chain 1o
- 30S ribosomal protein S15
- Chain 1q
- 30S ribosomal protein S17
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