J4_5HCR_019

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

5HCR|1|2A|U|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HCR_019 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0717

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5HCR|1|2A|U|1358
5HCR|1|2A|C|1359
*
5HCR|1|2A|G|1383
5HCR|1|2A|G|1384
5HCR|1|2A|U|1385
5HCR|1|2A|U|1386
5HCR|1|2A|A|1387
5HCR|1|2A|G|1388
*
5HCR|1|2A|C|1449
5HCR|1|2A|U|1450
*
5HCR|1|2A|A|1642
5HCR|1|2A|C|1643
5HCR|1|2A|C|1644
5HCR|1|2A|C|1645
5HCR|1|2A|G|1646
5HCR|1|2A|U|1647
5HCR|1|2A|A|1648

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23