J4_5IMR_004

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

5IMR|1|A|U|182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IMR_004 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.3094

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5IMR|1|A|G|142
5IMR|1|A|A|143
5IMR|1|A|G|144
*
5IMR|1|A|C|178
5IMR|1|A|A|179
5IMR|1|A|U|180
5IMR|1|A|G|181
5IMR|1|A|U|182
5IMR|1|A|G|183
*
5IMR|1|A|C|194
5IMR|1|A|A|195
5IMR|1|A|A|196
5IMR|1|A|A|197
5IMR|1|A|G|198
*
5IMR|1|A|C|219
5IMR|1|A|G|220
5IMR|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain X

30S ribosomal protein S20