3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
5IMR|1|A|U|182
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5IMR_004 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.3094
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

5IMR|1|A|G|142
5IMR|1|A|A|143
5IMR|1|A|G|144
*
5IMR|1|A|C|178
5IMR|1|A|A|179
5IMR|1|A|U|180
5IMR|1|A|G|181
5IMR|1|A|U|182
5IMR|1|A|G|183
*
5IMR|1|A|C|194
5IMR|1|A|A|195
5IMR|1|A|A|196
5IMR|1|A|A|197
5IMR|1|A|G|198
*
5IMR|1|A|C|219
5IMR|1|A|G|220
5IMR|1|A|C|221

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain X
30S ribosomal protein S20

Coloring options:


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