J4_5IT8_014

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IT8_014 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0679

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5IT8|1|CA|A|1772
5IT8|1|CA|A|1773
5IT8|1|CA|C|1774
5IT8|1|CA|U|1775
5IT8|1|CA|G|1776
*
5IT8|1|CA|C|1788
5IT8|1|CA|A|1789
5IT8|1|CA|C|1790
5IT8|1|CA|A|1791
5IT8|1|CA|G|1792
*
5IT8|1|CA|U|1827
5IT8|1|CA|G|1828
5IT8|1|CA|A|1829
5IT8|1|CA|C|1830
*
5IT8|1|CA|G|1975
5IT8|1|CA|U|1976
5IT8|1|CA|A|1977
5IT8|1|CA|A|1978
5IT8|1|CA|U|1979

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2