J4_5J8B_005

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

5J8B|1|A|U|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J8B_005 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.064

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5J8B|1|A|U|1358
5J8B|1|A|C|1359
*
5J8B|1|A|G|1383
5J8B|1|A|G|1384
5J8B|1|A|U|1385
5J8B|1|A|U|1386
5J8B|1|A|A|1387
5J8B|1|A|G|1388
*
5J8B|1|A|C|1449
5J8B|1|A|U|1450
*
5J8B|1|A|A|1642
5J8B|1|A|C|1643
5J8B|1|A|C|1644
5J8B|1|A|C|1645
5J8B|1|A|G|1646
5J8B|1|A|U|1647
5J8B|1|A|A|1648

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain X

50S ribosomal protein L23