J4_5J8B_012

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J8B_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5J8B|1|a|G|137
5J8B|1|a|A|138
5J8B|1|a|G|139
*
5J8B|1|a|C|173
5J8B|1|a|A|174
5J8B|1|a|U|175
5J8B|1|a|G|176
5J8B|1|a|U|177
5J8B|1|a|G|178
*
5J8B|1|a|C|201
5J8B|1|a|A|202
5J8B|1|a|A|203
5J8B|1|a|A|204
5J8B|1|a|G|205
*
5J8B|1|a|C|215
5J8B|1|a|G|216
5J8B|1|a|C|217

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20