J4_5JUO_003
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 5JUO|1|B|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JUO_003 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.2237
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JUO|1|B|U|112
5JUO|1|B|C|113
*
5JUO|1|B|G|267
5JUO|1|B|A|268
5JUO|1|B|G|269
5JUO|1|B|U|270
5JUO|1|B|C|271
5JUO|1|B|G|272
*
5JUO|1|B|C|293
5JUO|1|B|U|294
5JUO|1|B|A|295
5JUO|1|B|A|296
5JUO|1|B|G|297
5JUO|1|B|U|298
5JUO|1|B|G|299
*
5JUO|1|B|U|316
5JUO|1|B|A|317
5JUO|1|B|A|318
5JUO|1|B|A|319
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain MA
- uL29 (yeast L35)
- Chain NA
- eL36 (yeast L36)
- Chain Q
- eL13 (yeast L13)
- Chain S
- eL15 (yeast L15)
Coloring options: