J4_5JUT_013
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UAA*UC*GCU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JUT_013 not in the Motif Atlas
- Homologous match to J4_8P9A_020
- Geometric discrepancy: 0.1279
- The information below is about J4_8P9A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_37757.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5JUT|1|B|U|3010
5JUT|1|B|A|3011
5JUT|1|B|A|3012
*
5JUT|1|B|U|3042
5JUT|1|B|C|3043
*
5JUT|1|B|G|3098
5JUT|1|B|C|3099
5JUT|1|B|U|3100
*
5JUT|1|B|A|3134
5JUT|1|B|U|3135
5JUT|1|B|G|3136
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain AA
- uL14 (yeast L23)
- Chain G
- uL3 (yeast L3)
- Chain T
- uL13 (yeast L16)
Coloring options: