J4_5K0Y_001
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 5K0Y|1|A|G|397
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5K0Y_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.2596
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5K0Y|1|A|C|98
5K0Y|1|A|A|99
5K0Y|1|A|U|100
5K0Y|1|A|U|101
5K0Y|1|A|A|102
5K0Y|1|A|A|103
5K0Y|1|A|A|104
5K0Y|1|A|U|105
5K0Y|1|A|C|106
*
5K0Y|1|A|G|345
5K0Y|1|A|C|346
5K0Y|1|A|C|347
*
5K0Y|1|A|G|395
5K0Y|1|A|U|396
5K0Y|1|A|G|397
5K0Y|1|A|A|398
5K0Y|1|A|C|399
*
5K0Y|1|A|G|421
5K0Y|1|A|G|422
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- ribosomal protein uS17
- Chain I
- 40S ribosomal protein S4
- Chain Q
- ribosomal protein uS12
- Chain o
- 40S ribosomal protein S8
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