J4_5KCR_008

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KCR_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.031

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5KCR|1|1A|A|1772
5KCR|1|1A|A|1773
5KCR|1|1A|C|1774
5KCR|1|1A|U|1775
5KCR|1|1A|G|1776
*
5KCR|1|1A|C|1788
5KCR|1|1A|A|1789
5KCR|1|1A|C|1790
5KCR|1|1A|A|1791
5KCR|1|1A|G|1792
*
5KCR|1|1A|U|1827
5KCR|1|1A|G|1828
5KCR|1|1A|A|1829
5KCR|1|1A|C|1830
*
5KCR|1|1A|G|1975
5KCR|1|1A|U|1976
5KCR|1|1A|A|1977
5KCR|1|1A|A|1978
5KCR|1|1A|U|1979

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA