J4_5KCR_010
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 5KCR|1|1A|A|2288, 5KCR|1|1A|G|2382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5KCR_010 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.0436
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5KCR|1|1A|C|2285
5KCR|1|1A|G|2286
5KCR|1|1A|A|2287
5KCR|1|1A|A|2288
5KCR|1|1A|G|2289
*
5KCR|1|1A|U|2343
5KCR|1|1A|U|2344
5KCR|1|1A|G|2345
5KCR|1|1A|A|2346
5KCR|1|1A|C|2347
*
5KCR|1|1A|G|2370
5KCR|1|1A|G|2371
5KCR|1|1A|U|2372
*
5KCR|1|1A|A|2381
5KCR|1|1A|G|2382
5KCR|1|1A|G|2383
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1S
- 50S ribosomal protein L18
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