J4_5LMV_002
3D structure
- PDB id
- 5LMV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- GAG*CAUGUG*CAAAG*CGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5LMV_002 not in the Motif Atlas
- Homologous match to J4_4LFB_002
- Geometric discrepancy: 0.1249
- The information below is about J4_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_88771.1
- Basepair signature
- cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
- Number of instances in this motif group
- 1
Unit IDs
5LMV|1|A|G|142
5LMV|1|A|A|143
5LMV|1|A|G|144
*
5LMV|1|A|C|178
5LMV|1|A|A|179
5LMV|1|A|U|180
5LMV|1|A|G|181
5LMV|1|A|U|182
5LMV|1|A|G|183
*
5LMV|1|A|C|194
5LMV|1|A|A|195
5LMV|1|A|A|196
5LMV|1|A|A|197
5LMV|1|A|G|198
*
5LMV|1|A|C|219
5LMV|1|A|G|220
5LMV|1|A|C|221
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
Coloring options: