J4_5LZB_009

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

5LZB|1|A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZB_009 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.1505

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

5LZB|1|A|C|2285
5LZB|1|A|G|2286
5LZB|1|A|A|2287
5LZB|1|A|A|2288
5LZB|1|A|G|2289
*
5LZB|1|A|U|2343
5LZB|1|A|U|2344
5LZB|1|A|G|2345
5LZB|1|A|A|2346
5LZB|1|A|C|2347
*
5LZB|1|A|G|2370
5LZB|1|A|G|2371
5LZB|1|A|U|2372
*
5LZB|1|A|A|2381
5LZB|1|A|G|2382
5LZB|1|A|G|2383

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain W

50S ribosomal protein L27