J4_5LZE_009

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

5LZE|1|A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZE_009 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.1169

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

5LZE|1|A|C|2285
5LZE|1|A|G|2286
5LZE|1|A|A|2287
5LZE|1|A|A|2288
5LZE|1|A|G|2289
*
5LZE|1|A|U|2343
5LZE|1|A|U|2344
5LZE|1|A|G|2345
5LZE|1|A|A|2346
5LZE|1|A|C|2347
*
5LZE|1|A|G|2370
5LZE|1|A|G|2371
5LZE|1|A|U|2372
*
5LZE|1|A|A|2381
5LZE|1|A|G|2382
5LZE|1|A|G|2383

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27